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Shark Antibody Library Construction by Phage Display

Introduction Services Workflow Deliverables Highlights Applications Case Example Related Services

Introduction

The schematic of shark. (Creative Biolabs Authorized)

Shark antibodies—specifically the variable new antigen receptors (VNARs)—are the smallest naturally occurring antigen-binding domains in the vertebrate immune system. These single-domain antibodies exhibit unique structural stability, high solubility, and remarkable binding specificity, even against cryptic or enzymatic targets inaccessible to conventional antibodies. At Creative Biolabs, we leverage our advanced phage display platforms and several years of antibody engineering expertise to provide custom shark antibody library construction services. These VNAR libraries, built through naïve, immune or semi-synthetic sources, offer invaluable resources for therapeutic antibody discovery.

Why Shark VNARs?

Feature Benefit
Ultra-small (~12 kDa) Penetrates sterically restricted epitopes
Single-domain (no light chains) Simplifies expression and engineering
High stability (pH, temperature) Ideal for harsh assay environments
Long CDR3 loop Reaches buried or enzyme active sites
Low immunogenicity potential Amenable to humanization
Compatibility with phage display Facilitates large-scale high-throughput screening

These properties make shark VNARs uniquely suited for applications where traditional antibodies fail—such as enzyme inhibition, receptor modulation, or neutralization of highly conserved viral proteins.

Phage Display: A Precision Tool for VNAR Discovery

Creative Biolabs employs filamentous (M13), lytic (T7), and dual-display (T4) phage systems to construct and screen shark VNAR libraries. In phage display, the VNAR coding sequences are fused with a phage coat protein gene, enabling physical linkage of phenotype (binding affinity) with genotype (coding DNA), and allowing iterative selection (biopanning) of high-affinity clones.

Key Components of Our Phage Display System

  • M13-pIII fusion display: Favored for shark VNARs due to its tolerance for large insertions and monovalent format.
  • Phagemid/Helper Phage System: Ensures high-efficiency packaging and display
  • Custom Biopanning Strategies: Solid-phase, in-solution, cell-based, or in vivo, tailored to your target
  • Library Size: 10⁹–10¹¹ unique clones
  • Insertion Rate: ≥ 95%
  • Sequence Fidelity: Validated via Sanger or NGS

Our Shark Antibody Library Construction Workflow

Creative Biolabs supports both immune VNAR libraries (from immunized sharks) and naïve/synthetic libraries using codon-optimized frameworks. Our process is streamlined and quality-controlled to ensure reproducibility and high library diversity. Here is our standard workflow:

  1. Antigen Preparation & Validation
  2. Immunization (for immune libraries) or VNAR Scaffold Design (for synthetic libraries)
  3. RNA Extraction & cDNA Synthesis (not included in using synthetic libraries)
  4. Amplification of VNAR Domains (not included in using synthetic libraries)
  5. Cloning into Phagemid Vectors
  6. Transformation into E. coli
  7. Packaging with Helper Phage
  8. Library QC (diversity, titer, insert size analysis)

Fig.1 The construction process of shark VNARs libraries. (OA Literature)Fig.1 The development process of shark VNARs.1

Custom Biopanning Strategies

Shark VNARs often exhibit unconventional binding kinetics and can recognize conserved or buried epitopes. Our experienced scientists design biopanning campaigns optimized for:

  • Low-abundance targets (e.g., GPCRs, ion channels)
  • Conformational epitopes
  • PTM-specific binding (phospho-sites)
  • Enzyme inhibition sites

We typically recommend 3-5 rounds of panning with increasing stringency and incorporate negative selection if cross-reactivity is a concern.

Biopanning Type Application
Solid-phase ELISA-style panning on immobilized proteins
In-solution Preserves native protein conformations
Cell-based For membrane-bound or glycosylated targets
In vivo For functional marker identification in animal models

Deliverables

Upon completion, clients receive a comprehensive package:

  • Validated phage-displayed shark VNAR library (10⁹–10¹¹ diversity)
  • Vector map and cloning strategy
  • DNA sequences of top candidate VNARs
  • Phage titration and quality control data
  • ELISA binding profiles (if requested)
  • Expression-ready VNAR constructs (His-tagged, scFv fusion, Fc fusion, etc.)

Advantages of Our Shark Antibody Library Services

  • Expertise in phage and antibody platforms
  • VNAR, VHH, scFv, Fab, IgG – all customizable
  • Immune, naïve, or synthetic VNAR libraries
  • M13, T7, or T4 platforms, matched to project needs
  • VNAR library delivered in as fast as 4–8 weeks
  • Affinity maturation, epitope binning, humanization, and production

Applications of Shark VNAR Libraries

Shark-derived VNARs are increasingly used across biomedical and industrial sectors.

Therapeutic Applications

  • Inhibitors of enzyme active sites (e.g., metalloproteases)
  • Penetration of sterically shielded viral epitopes (e.g., HIV gp120)
  • Allosteric receptor modulation (e.g., integrins, cytokine receptors)

Research Tools

  • Intrabodies for intracellular target tracking
  • VNAR-based biosensors
  • Targeted delivery of small molecules or toxins

Diagnostic and Imaging

  • VNAR-Fc fusion constructs for immunohistochemistry
  • Radiolabeled VNARs for PET imaging

A Case Example: Anti-TNF VNAR Discovery

A recent project involved immunizing Heterodontus francisci (horn shark) with recombinant human TNF-α, followed by VNAR gene amplification and library construction. After four rounds of solid-phase panning, scientists identified five unique high-affinity VNARs (KD = 10⁻⁹ M). The top candidate retained binding activity after heat exposure at 70°C and was further humanized and formatted into a VNAR-Fc fusion for preclinical evaluation.

Our Service Package Summary

Item Details
Library Type Immune, synthetic, or semi-synthetic
Display System M13 (default), T7, or T4
VNAR Format Monovalent (pIII-fused) or multivalent
Screening Strategy Tailored biopanning (solid/in-solution/cell/in vivo)
Turnaround Time ~4–8 weeks
Other Options VNAR production, Fc fusion, humanization, or bispecific formats
For Research Use Only Not for diagnostic or clinical applications

Creative Biolabs is committed to delivering customized phage display shark antibody libraries with scientific precision and industrial reliability. Whether you're developing next-generation biologics, designing intracellular targeting tools, or exploring novel diagnostic agents, our shark VNAR services provide a competitive edge.

Reference:

  1. Cabanillas-Bernal, Olivia, et al. "Unleashing the power of shark variable single domains (VNARs): broadly neutralizing tools for combating SARS-CoV-2." Frontiers in Immunology 14 (2023): 1257042. Distributed under Open Access license CC BY 4.0, without modification. https://doi.org/10.3389/fimmu.2023.1257042
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