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Ex Vivo Phage Display Screening Platform

Introduction Phage Display Service & Workflow Screening Methods Applications FAQs Resources Related Sections

The schematic of ex vivo phage display screening platform. (Creative Biolabs Original)

Finding the right molecule to target a disease is one of the biggest challenges in drug development. Researchers need therapies that attack diseased cells specifically, leaving healthy tissue unharmed. Peptides, which are small proteins, are ideal candidates for this role. They are simple to produce, highly specific, and can penetrate tissues effectively. But out of billions of possibilities, how do you find the single peptide that binds perfectly to your target? The answer is a powerful technology called phage display. It allows us to screen huge libraries of peptides quickly and efficiently to find the best binders for a specific target. However, the quality of the discovery depends entirely on the quality of the test. Screening against artificial targets can lead to molecules that fail in a real biological setting. Creative Biolabs developed the ex vivo phage display screening platform, which is a specialized service within our complete portfolio of Phage Display Screening Platforms, each engineered to provide powerful solutions for your unique discovery challenges. Our platform performs phage display screening directly on fresh human or animal tissue samples. By using a true ex vivo model, we keep the cells, the surrounding microenvironment, and the target proteins in their most natural state. This approach provides the most accurate and predictive way to discover peptides for lab research.

What Is Phage Display?

Phage display is a Nobel Prize-winning method that uses a special type of virus, a bacteriophage, as a tool. We use these phages to build a direct link between a peptide and the gene that codes for it. Here's a step-by-step look at our phage display screening method:

1. Build a Library: We start by creating a massive library of phages. Through genetic engineering, we make each phage display a unique peptide on its surface. Our libraries contain billions of different peptides, creating a huge pool of candidates to test.

2. Find the Binders (Biopanning): This is a four-step screening process to find peptides that stick to your target.

  • Binding: We introduce the phage library to the target. Phages with peptides that recognize the target will bind to it firmly.
  • Washing: We wash away all the phages that did not bind or only bound weakly. This step is crucial for eliminating non-specific results.
  • Elution: We then recover the phages that remained tightly bound to the target.
  • Amplification: These successful phages are used to infect bacteria, which makes millions of new copies of them. This amplifies the population of strong binders.

Fig.1 The steps of phage display biopanning. (OA Literature)Fig.1 Phage display biopanning.1,3

3. Repeat and Enrich: We repeat this binding, washing, and amplification cycle three to five times. Each round enriches the pool of phages, increasing the concentration of the very best candidates that bind your target with high affinity.

4. Identify the Winners: After the final round, we sequence the DNA of the enriched phages. This tells us the exact amino acid sequence of the peptides that successfully bound to your target.

This process allows us to systematically search through billions of options to find the novel, high-affinity peptides you need for your project.

Our Proven Ex Vivo Screening Workflow

At Creative Biolabs, we have perfected every step of the phage display screening method to deliver clear and reliable results. Our platform is a complete service, guiding your project from start to finish.

Step 1: Planning and Tissue Handling

Your project starts with a detailed consultation with our experts. We work with you to define your goals. We then manage the preparation of your valuable ex vivo samples. Our team is skilled in handling both fresh and frozen tissues to preserve their biological integrity. We can prepare your tissue in two ways:

  • Tissue Homogenates: The tissue is gently processed to create a cell suspension. This makes all potential targets within the tissue accessible to the phage library.
  • Tissue Sections: We prepare thin slices of the tissue. This method preserves the tissue's original structure, which is perfect for identifying peptides that target a specific location.

Step 2: High-Quality Phage Libraries

We provide world-class phage libraries with unmatched diversity.

  • High Diversity: Our libraries contain up to 10⁹ unique peptides or antibody fragments, giving you the best chance to find a perfect match.
  • Custom Formats: We offer libraries with different peptide lengths and structures to fit your needs.
  • Quality Control: We amplify and check every library before screening to guarantee top performance.

Step 3: The Ex Vivo Biopanning Cycles

This is the core of our discovery process.

  • Incubation: We incubate our phage library directly with your prepared tissue sample. Phages with peptides that recognize a target will bind to it within this realistic tissue environment.
  • Washing: We use a series of stringent washes to remove any non-binding phages. We increase the washing intensity in each round to select for only the peptides with the highest affinity.
  • Elution and Amplification: We collect the phages that remain bound and use them to infect bacteria, creating millions of copies of the best candidates.
  • Enrichment: We repeat this process 3-4 times. Each cycle enriches the pool for the most specific and high-affinity binders to your target.

Step 4: Hit Identification and Validation

After enrichment, we identify and confirm your lead candidates.

  • Next-Generation Sequencing (NGS): We use NGS to sequence all the enriched phage clones. This gives us a complete picture of the best peptide candidates and helps us find common binding patterns. (View our phage display NGS service)
  • Data Analysis: Our bioinformatics team analyzes the sequencing data to rank the top peptide candidates for you.
  • Binding Confirmation: We synthesize the top peptides and prove that they bind specifically to your target tissue. We often use advanced ex vivo microscopy techniques to visualize the peptide binding directly on tissue sections. This provides clear, visual proof that your peptide hits the right target in the right location.

Choosing the Right Model: A Comparison of Phage Display Screening Methods

The environment you screen in determines the quality of your results. Different phage display screening methods provide a trade-off between simplicity and real-world relevance. There are some traditional screening methods:

  • In Vitro Protein-Based Screening: This method uses a purified target protein attached to a plastic plate. It is simple and fast. However, proteins can behave differently when they are isolated and stuck to a surface. This can lead to finding peptides that do not recognize the protein in its natural home on a cell.
  • In Vitro Cell-Based Screening: This is a step up, using lab-grown cell lines as the target. This method presents the target protein on the cell surface, which is much better. But these cell lines are not the same as cells in the human body. They lack the complex environment and interactions that influence how a target behaves in a real disease.
  • In Vivo Phage Display: This technique screens for peptides inside a living animal model. The phage library is injected, and it circulates to find its target organs or tumors. While powerful, in vivo phage display has a major limitation: a peptide that works in a mouse may not work in a human. This species difference is a big obstacle to translating results to the clinic.

This table clearly shows the advantages of our ex vivo approach:

In Vitro Protein-Based Screening Platform In Vitro Cell-Based Screening Platform In Vivo Screening Platform Ex Vivo Screening Platform
Target System Purified protein Cultured cell lines Living animal model Fresh human/animal tissue
Biological Context Artificial Simplified Physiologically complete (animal) Physiologically complete (human/animal)
Microenvironment Absent Absent Present (animal) Present (human/animal)
Clinical Relevance Low Moderate Moderate (species barrier) Highest
Key Advantage Simple, fast Target in cell context Systemic biodistribution Preserves native human biology
Key Limitation Non-native protein folding Lacks TME Species differences Requires fresh tissue

The Ex Vivo Advantage: Screening in the Most Realistic Setting

Our ex vivo phage display screening platform is the solution to these limitations. We perform the screening on fresh tissue samples taken directly from a human or animal. This ex vivo model provides unmatched benefits.

  • Real Tissue Structure: Ex vivo samples maintain the original, complex 3D organization of the tissue. This means all the cells and the surrounding matrix are exactly as they would be in the body, providing a true-to-life screening environment.
  • The Complete Microenvironment: Diseases like cancer involve a complex ecosystem of tumor cells, immune cells, and blood vessels called the tumor microenvironment (TME). Our ex vivo approach includes this entire TME during screening. This allows us to find peptides that can navigate this complex environment and reach their target effectively.
  • Direct Human Relevance: When we use patient-derived tissues, we eliminate the guesswork. The peptides we discover are selected for their ability to bind to human targets in real human tissue. This approach is intended to identify promising candidates for further investigation, not for direct clinical use.

Fig.2 Schematic of phage display biopanning, detailing in vivo, ex vivo, and in vitro selection, phage recovery, amplification, sequencing, and identification of tumor-targeting peptides. (OA Literature)Fig.2 In vivo, ex vivo, and in vitro phage display.2,3

Applications: What You Can Do with Ex Vivo-Discovered Peptides

The peptides discovered on our platform can accelerate your research and development in many ways.

  • Find New Biomarkers: By comparing screening results from diseased and healthy tissues, we can find peptides that bind to completely new disease markers. These peptides can become powerful tools for new diagnostics.
  • Build Targeted Drugs: Attach your drug to one of our peptides to create a targeted therapy. This allows you to deliver your therapeutic payload directly to the disease site, which can increase effectiveness and reduce side effects.
  • Develop Advanced Diagnostics: Link our peptides to imaging agents for use in ex vivo imaging of biopsies. This can help pathologists make more accurate diagnoses. These peptides also have great potential for creating new in vivo imaging agents.
  • Create Personalized Medicine: Our platform can screen a library against a specific patient's tumor tissue. This allows the discovery of peptides tailored to that individual's disease, opening the door for truly personalized treatments.

Developing targeted therapies that work is a major undertaking. Your success depends on using the best models from the very start. Traditional screening methods often fail to predict how a molecule will behave in a human patient. The Creative Biolabs' ex vivo phage display screening platform gives you a clear advantage. We use the real tissue to find peptides that are primed for clinical success. We combine this powerful ex vivo model with elite phage libraries and an expert-driven workflow to deliver results you can trust. Contact us today and partner with us to harness the power of ex vivo screening.

FAQs

What makes your ex vivo platform more advantageous than standard cell-based screening?

Our ex vivo platform uses intact human or animal tissue, preserving the native cellular architecture and complex microenvironment that are absent in cell culture models. This provides more clinically relevant data for discovering peptides. Our services are strictly for research use only and not for clinical applications.

How do you handle the tissue samples to ensure they remain viable for screening?

We use optimized protocols for the rapid processing of fresh or frozen tissues. Screenings are performed under controlled conditions to maintain the tissue's biological integrity and the native conformation of target proteins. This ensures the highest quality screening environment.

What types of tissues can you work with for an ex vivo screen?

We are equipped to handle a wide variety of tissues, including tumor biopsies, healthy organs, and specific diseased tissues from multiple species. We can process both fresh and properly frozen samples to meet your project's specific requirements. Our services are designed for research use, not clinical diagnostics.

Can you customize the screening to find peptides specific only to diseased tissue and not healthy tissue?

Yes, we can perform subtractive panning. The phage library is first incubated with healthy control tissue to deplete non-specific binders before it is exposed to the target diseased tissue. This greatly enhances the specificity of the identified peptide candidates.

Reference:

  1. Davidson, Thomas A., Samantha J. McGoldrick, and David H. Kohn. "Phage display to augment biomaterial function." International journal of molecular sciences 21.17 (2020): 5994. https://doi.org/10.3390/ijms21175994
  2. Ayo, Abiodun, and Pirjo Laakkonen. "Peptide-based strategies for targeted tumor treatment and imaging." Pharmaceutics 13.4 (2021): 481. https://doi.org/10.3390/pharmaceutics13040481
  3. Distributed under Open Access license CC BY 4.0, without modification.

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